NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076923_115667

Scaffold Ga0076923_115667


Overview

Basic Information
Taxon OID3300005735 Open in IMG/M
Scaffold IDGa0076923_115667 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016276Metagenome / Metatranscriptome248Y
F095149Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0076923_1156671F095149AGGMRKIILIGMILAGMTGFAKADANKVITDITSAPAKLQTHIQSQIEDAKEYQKNSWAEAKLQLLRLKAKFIKN*
Ga0076923_1156672F016276N/AMIIRGHSGQDIRRMIWRRKFKLLTVAVLILIAVTLTGCSKPKPTLNALDKFWDTLGGKTTDLVKETK*

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