Scaffold Ga0076923_115667

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0076923_115667

Scaffold Ga0076923_115667

Overview

Basic Information
Taxon OID	3300005735 Open in IMG/M
Scaffold ID	Ga0076923_115667 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - control T0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	798
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016276	Metagenome / Metatranscriptome	248	Y
F095149	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076923_1156671	F095149	AGG	MRKIILIGMILAGMTGFAKADANKVITDITSAPAKLQTHIQSQIEDAKEYQKNSWAEAKLQLLRLKAKFIKN*
Ga0076923_1156672	F016276	N/A	MIIRGHSGQDIRRMIWRRKFKLLTVAVLILIAVTLTGCSKPKPTLNALDKFWDTLGGKTTDLVKETK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.