Scaffold Ga0076919_1056932

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1056932
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11481
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052433	Metagenome	142	Y
F059124	Metagenome	134	Y
F072426	Metagenome	121	Y
F073751	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_105693210	F059124	N/A	MNFDSNLVMAIIIYLGSCYVLYNYKHSKMFDKSGNFKSFGLGNDETVFPYWLVTTLIGLSSYYFLIIRRDNLI*
Ga0076919_105693211	F072426	N/A	MNTKPKLVDPNWFVKPKPIVKKIIPTNTDNSLIINIIGLCILLIGGLCIYQRYLDREKTELETQNKIIELNEYVKRNIK*
Ga0076919_10569326	F052433	N/A	MDSSKYYPYNIPFYTDVKFIDVKFINNEDHLINIFFVKGDILGELAGIIFPHSERNYQFPENSIVAIISDKNPNKYHCFIKLIDGMTYIYP*
Ga0076919_10569328	F073751	AGG	MVHNNIKWKLTSEKCFEIIHLTLIDILSESKEGIRNINELIMMLNKRTKVYKLHNSRKYNSFSKYLKIEYNGFLNFIENYNFYGVIKNDKNISIKLYKNLVNLDDLKYTGKRLTKDSEWVFIDDELL*