Scaffold Ga0076919_1038010

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1038010
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3337
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019312	Metagenome / Metatranscriptome	230	N
F031655	Metagenome / Metatranscriptome	182	Y
F039095	Metagenome	164	N
F063568	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_10380101	F019312	N/A	MMTHTQAIYKAQIVFEEALSDKETIDKLLHIDAQMYANTGLETSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQGMGLTR*
Ga0076919_103801010	F039095	N/A	MDKLKEEDYSWVRGGSKSIALLWLRQKNQDLMEIANALKPQDPSNEYEMDIFIDLVSIYSAIDASIGMVEDVQKMVWEAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK*
Ga0076919_10380105	F063568	AGAAG	MENTKVSKLLLVWLWTQGHKVKEYKEAEGITTVHGKEEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR*
Ga0076919_10380108	F031655	N/A	MNFAIDIAPLAGLLVGANYWNSEMNEDFENPKYHSLQLCFGVFAIVITWATEE*