Scaffold Ga0076919_1024004

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1024004
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27935
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.32%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053385	Metagenome / Metatranscriptome	141	Y
F064877	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_102400421	F053385	N/A	MNLILTLGFLTGLSFGSYQFCNWYACNNWYACNNWYACNNWLSFMRADLIRNACTDANYQTSIYGIIFTLITYQFTILINKVSSQTDTYIFEDYSLGKKSPRSLKKV*
Ga0076919_102400439	F064877	N/A	MTSMEEQSRCFYLDSDYQPASDMLRKCVGDNTSPYRFNCGDDPMRQELPEDVKETARMNDISIQRGFSYYNVDNHNVNSFSDKPNIIKKPSNTMNSYGVEGFQNQFITDNGLGESSIPKGECPEGYSRDLVSGKCMQKCIGCVYRDNMKSREFNEADPCFPNGVYNGLNSDGFIKCTCGRDNKYCSDNFIKNIFTTDGMMISGQKIIMNTGLTKKVNEMFNFNYL*