Scaffold Ga0076919_1001852

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1001852
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10815
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003237	Metagenome / Metatranscriptome	498	Y
F060822	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_10018521	F003237	N/A	MNMDNKQFMCGEVQAELETNVDGSLTIKKIIKNK*
Ga0076919_100185220	F060822	GGAG	MKKKKKKQIDVDCGYNEESANNVYMFHNIKNNIHLFINAYDLEDAMVQFDLCDFAFRKEWRVFLETGQQPS*