NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068861_101790541

Scaffold Ga0068861_101790541


Overview

Basic Information
Taxon OID3300005719 Open in IMG/M
Scaffold IDGa0068861_101790541 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp. U5L(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023752Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0068861_1017905411F023752N/AYGFFGRLRPTWVSFVLFNLLLLISVELGARSAVKLFFPNKEVSLARRAAWSYDELRKLTGHPFLQFNGISSTTSNQMLGWYFSNFNSRQLEGVDSFKASTGNLDIFNNFGFLGSDFAYAKPPGVIRIGALGASTTADGYPAMLEEYLNARVAAQSNRFEVMNFGHGFYTSAHVLVNFVLNVIDFAPDYVIIHQAANDEHARA

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