Scaffold Ga0068861_100005911

Overview

Basic Information

• Taxon OID: 3300005719
• Scaffold ID: Ga0068861_100005911
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8316
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F001576	Metagenome / Metatranscriptome	669	Y
F082332	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068861_10000591110	F001576	AGGA	VNCTAYWNHAKNAAMLVFMLLACSTSGLTQQPAGTAPEQKQPAKPATTTTTPDKKPTAKPGFELIVKTRPILNLSLKAEKAKMSEVAHQLSEKLKIPVFLGPERQKELITIEFSELTLEPALQLMSPTVYVDFELDTGSLDPPKALGIYFFDVNQGEPPVTAVVSGASQSFLVEGNTEDGVEPTTDDEKQKAEEQPLRVKYENNTLTVKAKKQPLPLVLLKIGEEIGIPVDIQNERLDPIDADISKLPIEDVVRQLSPYIKLYYRADLTRAEKRALRMVLAEPAKASQEGP*
Ga0068861_10000591111	F082332	N/A	YNIGVRKSLTARARYFLYMLRPTDSDVSRRVLPARLSFGYYVLRPFRLLFKTKMT*
Ga0068861_1000059119	F001123	AGGAGG	LAKQNDMINEESAGLQNGSGVAGEINESKKVFVEPAISVPVDVLEATTFFQAATSGATN*