NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068866_10223772

Scaffold Ga0068866_10223772


Overview

Basic Information
Taxon OID3300005718 Open in IMG/M
Scaffold IDGa0068866_10223772 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074923Metagenome119N
F097956Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0068866_102237721F074923N/APTSRAKYVTRARGQASRSLINRELPHRVLMRAEDVRGRALDAVYAFHDNRGVPVRCHSLRKDDEWYSVYCFTGRGMAEGFHLLFGGQLLNALKPR*
Ga0068866_102237723F097956AGGAMSRYRSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHNWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*

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