Scaffold Ga0066905_100607732

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066905_100607732

Scaffold Ga0066905_100607732

Overview

Basic Information
Taxon OID	3300005713 Open in IMG/M
Scaffold ID	Ga0066905_100607732 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	926
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F053163	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1006077321	F053163	GGAGG	MYDRTIDRMSDSASEFLVQFYLQSPKLSVSVLLAAWLVLFFAALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRNSQTGQLAVADWRSDPTEHRSGGRFALLIEHRSDKQTEVYSTLSQRIRVKPQTGYNVRFWAKVDRM
Ga0066905_1006077322	F013098	N/A	RPDRSGTLPAHFCVPMRLAWLAAIAAAVITVGGCSSAPFVGYRNGPVTLYIGDVHHVGAAGGSGNRGCTMRYPNGRVEVYCAEGDYECLAHELRHVADPTWQHDLDYRSVSAR*

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