NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100388930

Scaffold Ga0066905_100388930


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100388930 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080303Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1003889301F080303GAGGMTQIAECATPTPSRGRQIKFTPERIQQIKNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLRRPNFNNGIVSLRRNDPRLNRVLAPGSDHGGDSALLQVERNSQAGGVDQVRAPPKHEMEQKVDEPGGATFAIRMQYRGEERTTELPLTQDMIGQLAFEAAFRNVSIGDFIGELIVAVVQQDLLQPVLECKGADERKETL*
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Biomedical Sciences Research Center "Alexander Fleming"
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