Scaffold Ga0066905_100314265

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100314265
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1236
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F002001	Metagenome / Metatranscriptome	606	Y
F003338	Metagenome / Metatranscriptome	493	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1003142652	F002001	N/A	LANPFRGAYVPAVSPAYLSQKLTPPLATKDGGTLRTILDARAYMLALSKQRETSARWQRAAELVLAEDDVGTFSKQLELALFYDAKLDLAT*
Ga0066905_1003142653	F000037	N/A	MTQLILKRASTSRPSGEWNDDDYDVLANGAVVGRIFKVHAAPIGTPWMWTLAFGQHEDHTPTHGYAATREAAMEAFAKSWRRE*
Ga0066905_1003142655	F003338	N/A	RRHYRRPNPDRRRALELLAGSRYGYTKAILRAHGFSTDMMVELVEAGLATTKRERMVADGRQTGVVRVRITDAGRQALAKMSK*