Scaffold Ga0066905_100117792

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100117792
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1845
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000535	Metagenome / Metatranscriptome	1044	Y
F006474	Metagenome / Metatranscriptome	372	Y
F008416	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1001177921	F006474	GGAGG	MRGAENDEPEMPFRRGYQQGAIDLFLAIERCLDPTTREVLQAWIEKDVSMWRAKAMLGHPPNWRLNMMAGPRSAGRPLGGLDLRYAAGAA*
Ga0066905_1001177922	F000535	AGCAGG	MNSQMTTLRTNFTFRVDTWTADGESIVEHVAGVEDYEVALATYHAACLRWPGTSITLRQGARVIEDSRRLRMA*
Ga0066905_1001177923	F008416	AGGAG	VLSFAREHARQPRGGSNVHTFIPVLLERLEAENAQLRRSVVELALQIQALRDANRS*