NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100081514

Scaffold Ga0066905_100081514


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100081514 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2128
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014716Metagenome260Y
F068242Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1000815143F068242GGAGGMRIWPPQVLTQIGPIIVRPGDGALKNVRRIGNRLSLTVVHEGQEAWGGFELEQDQRPSLDAVERVLKASVGKSIQEIGDLDVG*
Ga0066905_1000815146F014716AGGVVVVLPIDTIKRILDRVTNLPEQASEFILGEALARVIRADIETNSPTPTKPLPKLAENIVSALEKARDNKTLIDGGKQVGHLRRDDFTTLRDWCRAMRLGSDAAAVEAAVTVALG*

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