Scaffold Ga0066905_100075320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066905_100075320

Scaffold Ga0066905_100075320

Overview

Basic Information
Taxon OID	3300005713 Open in IMG/M
Scaffold ID	Ga0066905_100075320 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2192
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005856	Metagenome / Metatranscriptome	388	Y
F006356	Metagenome / Metatranscriptome	375	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1000753202	F006356	GGA	MADREAQVQRLALALAVSATMLCYGSATRAQTGTAFYPVEFAACQPLPPWYPRGWELMVRYPCVTYVHGTSYYPPAYYYPYPAAYPRQRVSIHAIRRVHRRPYLRPGWWW*
Ga0066905_1000753203	F005856	GGA	MQRITTFVSFAVFGFLAGSSTALAEQGGTEPARLNAPREQAPVAPIKPIQGDRIPKQIRSAPAPRDVGTGQHEAQPRSRTDHPPLAGVEHVPSSGVQQVRPRAVYREAARRINIAGGVLVLPVVGYYGVPVILNVPEIGYVDVPEGEYARLYDKLTSSDSEQVQEAMSSLRKLKELEDAEVEAAQRGPQRMEPADPQDLSEPIFFDAPPRVETRRRGLY*

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