Scaffold Ga0066905_100042441

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100042441
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum → Bradyrhizobium japonicum SEMIA 5079 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058411	Metagenome	135	Y
F070516	Metagenome	123	Y
F098285	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1000424412	F058411	GAGG	MREESQREIGEAIMTIKSFLLTCGIFCGGYVSNTLLDSALEAAESYFHVQTSTYKIDSNGYIICSPEKPR*
Ga0066905_1000424413	F098285	GAG	MTDVGSTLKSAVSTSLKIIAILVIVAVPVCAQAQNPSVAKVSKGDAQTVVKIIGGDKAKTQTYCNIKKLDQQIAQADEKKDSKMADELSQKVGELEKTLGPEYVALIDGLQDVDPETDEVGEEIMLTLLALDGLARGKCRL*
Ga0066905_1000424414	F070516	GGGGG	MKKKSLLHYELYGSSTRGDKIGYWRWAIFAGREKKPLSVGSFYGTLPEAKEHAEAAISRLKERTRNNKARRDWSRKSAP*