Scaffold Ga0066905_100018821

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100018821
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3607
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004783	Metagenome / Metatranscriptome	423	Y
F006655	Metagenome	367	Y
F007743	Metagenome	345	Y
F011575	Metagenome / Metatranscriptome	289	Y
F014341	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1000188212	F004783	GGAGG	MQSVQDQLTALLLTYRTIRFCDGCIALKIGAFLRDVREAMSLIGDGFQISSGKCSECLEEKTVVRALAA*
Ga0066905_1000188213	F014341	N/A	VLLALFVIGAFGAIAVWGIVVLLHAGMTESQRMIALGGIVVLMAALAAWVIFLWPAYWD*
Ga0066905_1000188214	F006655	AGG	MPRFANRFVAFSLLTIAATVHAEGAWVLWEHAYEVWVDNDKNNHRRDIHWTKVATTAAKADCKDRAAQEARADYDTLTGKGVRATLTGSEVGFSQRNTRFTHGYRRFECYPDTVDPRGAKGK*
Ga0066905_1000188215	F011575	AGGAGG	MDGLVQIQVVVQGSAGAVGLVGLDTQGRVWYGDLSGAPAPARYSIKWTKIEERVEGPATRKA*
Ga0066905_1000188216	F007743	GGAG	MGYRSRATSVAIGVLLVVLASGTAAQPPTVPEQPLVFEGRVLWVDFGNQAMAVAPANNTPAVTIDLHRIRQGDYQGFRGTEYVRIVGYILRPSRRIQAFELYLVTPWFPTAPP*