Scaffold Ga0066905_100018179

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100018179
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3647
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005957	Metagenome / Metatranscriptome	385	Y
F011427	Metagenome / Metatranscriptome	291	Y
F037399	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_1000181791	F011427	GAGG	MYLRGKFGTGAYEDYRLGTAVGFILAAYLGFFVALYWLMQPSVGANPGLAAYQPPPKTVVRYADSPWVPPAPSEALAIPAATEPVPELAKNSVTEAPKKETKKQEARTAPRRARPVREQPNPFWGYASSRSFGFR
Ga0066905_1000181793	F037399	GGAGG	MKILVMLVFAISLIGGTSVVQAQSSRDLTEPTGTEANRLRTQTGGYYGGGYGAYAYVPRLHRRHWSHRRW*
Ga0066905_1000181796	F005957	GGA	MSTGARLYALLAAIKRSPILVRMSDRLLLARPWASVRNSKDVDAYVLAWIASHVRGPRRPPRTLM*