Scaffold Ga0066905_100014838

Overview

Basic Information

• Taxon OID: 3300005713
• Scaffold ID: Ga0066905_100014838
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3909
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000853	Metagenome / Metatranscriptome	860	Y
F030008	Metagenome / Metatranscriptome	186	Y
F041923	Metagenome	159	Y
F094335	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066905_10001483811	F041923	N/A	PVPYDKINNVIAPDGGAHVCAPKQAGSNKGVIFCVILPSEG*
Ga0066905_1000148384	F030008	N/A	MPSSAARAHRGLLVTVLCAGVTFAHAQQLRSIESLNQSYVTCVQSAFERRLDDFGVSSLPQAAERAFLDCQSEEDALYTAAVASAPGNTQAMALVRAAVEQLKASLKAELLAEMPAKE*
Ga0066905_1000148387	F000853	AGG	MNIPTEQLRERTSLDEHGRAGQSDWARAMAEAEEVLRELALFTRRSKPARSSTANETPKAPSLVPAPSLIDLLVLDPGLDFVVHKDGVIELTEVGFRRMAQAHSAMIDVVIRIDSRDVLRFPV*
Ga0066905_1000148389	F094335	GGAG	MPEPIENDSPEMSFRRGYQHGVIDVFRAIERLLDPASRQILKDWIEKDIYVWRTKAMLGYPPLWRLRRLAGQRAQQ*