NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070764_10067925

Scaffold Ga0070764_10067925


Overview

Basic Information
Taxon OID3300005712 Open in IMG/M
Scaffold IDGa0070764_10067925 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1856
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F013663Metagenome / Metatranscriptome269Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0070764_100679251F013663AGGCGGVIHTRPDRDGEEQLRLLGAAWEEAAQHWQDEVARQFDTGHWTPLVQHSRTYLEALRALMDLLETAER
Ga0070764_100679253F001698AGGAGMSGVINDIDALAEFRAHLMRFNRDLAENFATMRGHWRELGDVWRDDMYRKFGEALDEVTPGITAYLSATEGHEAHLAALIDRLREYLETGLGTGAGAGTSRTDTSRG*
Ga0070764_100679254F037832AGGAGMTTQERTVEPVMAPSVYLSLRNAVRPAIYAHFLLAEDQERAGQLAAECEDLLFLTRELLKAVGLAGILGAGPAVVDAAVDEDGGDRQAQLLGAYAEAGLLWAKVVGSTMALARGLLDRGDRDAVRRLAGFLAEAGEDGAATDLKIGLGKAVWATHRESLQNISNTMPPAAIGTAIDALRAVLLEVPEDYPDRNREVNRFLAPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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