Scaffold Ga0070764_10004849

Overview

Basic Information

• Taxon OID: 3300005712
• Scaffold ID: Ga0070764_10004849
• Source Dataset Name: Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6345
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006944	Metagenome / Metatranscriptome	361	Y
F018767	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070764_100048497	F018767	GGAGG	MQKAQLYEAIFLMNRGVDEAVRGLEGLKRAKESQLESACFDEELLVFEDHRAPLNSYFCSALQRTEQHNSVRFEARSRKYENRTLDEEQDYRDVGAVEARRRVEGKSHKVRFLTPEEQGEWEQQFPTPSDAPRSEREPNL*
Ga0070764_100048498	F006944	GGAG	MKIKKREAAKTQQRDSSKPGKQYPGVHGRVVDWAEHVFEEGMMYVRVRFTDKTELCWTLQTAHVLRESDLSDWKTGDCKQLTVYAENEIDWPE*