Scaffold Ga0074219_101835

Overview

Basic Information

• Taxon OID: 3300005692
• Scaffold ID: Ga0074219_101835
• Source Dataset Name: Human fecal microbial communities J. Craig Venter Institute, Maryland, USA - Subject 7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 903
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The State University Of New York At Buffalo, New York, Usa, Of Three Healthy Adults

Source Dataset Sampling Location

• Location Name: J. Craig Venter Institute, Rockville, Maryland, USA
• Coordinates
  • Lat. (^o): 39.134321
  • Long. (^o): -77.181702

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092228	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074219_1018351	F092228	N/A	DYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVISKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS*