Scaffold Ga0073685_1188583

Overview

Basic Information

• Taxon OID: 3300005664
• Scaffold ID: Ga0073685_1188583
• Source Dataset Name: Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 512
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic → Freshwater Viral Communities From Emiquon Reservoir, Havana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: Havana, Illinois, USA
• Coordinates
  • Lat. (^o): 40.362238
  • Long. (^o): -90.047137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036700	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073685_11885832	F036700	AGGAG	MRFTSSTFSVDAASDGSPKRTITGIALPYNVEATVSGGQVVSFMPGSLPTDGKAPKLYMSHDSTQAIGLVTERADSPEAMYFTAKVS