Scaffold Ga0073685_1072673

Overview

Basic Information

• Taxon OID: 3300005664
• Scaffold ID: Ga0073685_1072673
• Source Dataset Name: Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 936
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic → Freshwater Viral Communities From Emiquon Reservoir, Havana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: Havana, Illinois, USA
• Coordinates
  • Lat. (^o): 40.362238
  • Long. (^o): -90.047137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048174	Metagenome / Metatranscriptome	148	Y
F075867	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073685_10726731	F048174	GAG	MSDKGQLNNKDVQSHSEVVEALLKSEIERLKEDLDRLHRERDAFSRQCSVMAEENQQWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIHKNEFKATLGSDDTRVEIDRAMEMCK*
Ga0073685_10726733	F075867	GAGG	MKTALKPSDKHFLQYDAATYEHEGFKTLNGRISQLALEPRFWSVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVC