Scaffold Ga0078894_10837347

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10837347
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F007468	Metagenome / Metatranscriptome	350	Y
F025671	Metagenome / Metatranscriptome	200	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_108373471	F025671	N/A	LEYENRCYACQSFNTLDYCEDDCGEFCSECNQGSWQDEEAMAKCQTHMVLLETTEKVEA*
Ga0078894_108373472	F000868	GAGG	MSDPHGIIGNYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA*
Ga0078894_108373473	F038241	AGGAGG	MLGYTKEDLDQMSNAVHDAKLFYIRNSDVEQVDQDPLVEGLLKANDFLQGLWAEGYFD*
Ga0078894_108373474	F007468	AGG	MISYKDYGRRVILTKSSHFLEYMKLHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNSNERVYG*