Scaffold Ga0078894_10780502

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10780502
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 837
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F010916	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_107805021	F001754	N/A	NPKFEVIVSYTDFLGKTHNIVCKSRPKLKEANEFLKMFKTESVKINQILAEYPVVSGKFPKKYHSEIKRELASAGFGSVSNFLIK*
Ga0078894_107805022	F003291	N/A	MSMNQTTEKLVSVFNQDELAALMTAMAGYVNVKRKQNRSTAIETVVFNKVVEALLVSNYLNAEEIEVKPNANAPMGSAAYKAYEAMYDSDVMAHR*
Ga0078894_107805023	F010916	N/A	MSTVQTIQDELLSLVIGHDWSYMMSDSHPVWDAGMNVERNIQAKIHALCAIHKEDAEALYGIVKGIAGPDYSDKDANGYGLKYRT