Basic Information | |
---|---|
Taxon OID | 3300005662 Open in IMG/M |
Scaffold ID | Ga0078894_10367297 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1302 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F068609 | Metagenome / Metatranscriptome | 124 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0078894_103672971 | F006785 | GGAG | MTGGEWTTRGRQKEAREAEREQLRLEKRHLRDLRWAIERSSIEASDWADLLALQAAHGKEGPLQLWRELVPYWRDCQRLNGGADIPSELFPQATGLFSRSTSEPVPAAPTNRVRASQGSPRKRRSDAGKAQPSRKRTNTKAAPATGD* |
Ga0078894_103672973 | F068609 | N/A | MALIRTTEPRGTFRVTYETVTAESAEHGDYAASGWLDWLGSPVDSYADSEWDLRDLMGSLAGHYAEGDGDTVPRWITLDPESDFRQSSFWRGIAGEDALSVTASVHRPDWITDASWLRVCRLLGWHSGR* |
⦗Top⦘ |