Scaffold Ga0078894_10319641

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10319641
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1407
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F034924	Metagenome / Metatranscriptome	173	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_103196412	F034924	GAGG	LPTYRVFGTKYVNYYTIVSADDEYQAAEIANSRPSIEWNQIQIDDEIEATDVFLDDDTLTDLQLNM*
Ga0078894_103196413	F001019	GGAGG	MSYAPSLEILEVAYDVSPGGVRTFEVYDKLDIDPIVNLPIYETESLTDAVEYCYNLDKDFIVRTYAEWEMRELIADL*
Ga0078894_103196414	F000441	AGGAGG	MKMSDTYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTEGQ*
Ga0078894_103196416	F082666	AGGA	MIEQAEAIDTRLQNAVDLGISGVDIMHGELKILMLVAEQELANAQAIEDETEEAMDSMERKYWEGVLDAYTELYKMTYDLSFAIGARK*