Scaffold Ga0078894_10317645

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10317645
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045760	Metagenome / Metatranscriptome	152	N
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_103176451	F045760	GGAG	MASSGSKAKQAYAALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHDNIRIAKLFKEFTGRASADLFSSNPKVQSGALAYRRDWDKVKVIEGKVNFSLGARAHDSKGNLIWK*
Ga0078894_103176452	F078719	AGG	MEVIEVYFLFALTTGITSCYVFLSPAIALARDTGVQNSFTENTWLSYLIYITITTITAPFSVLPIFIPSFAERFKAGLERSVMESQT*
Ga0078894_103176453	F099303	N/A	MNFLEFTYTKADGTESKRAAIPLFGPTKFVEAIDVSQMPEDEFAVFCREFSALKSAQHEQTMAILAQFDLKHNYRKFNPEQMSDITTDYV*
Ga0078894_103176454	F070116	N/A	MSKFRTWDSQILTDAVKISLQIRTKIEEMCVAAHTPPDGLPNSLIPTDNLYSLVCAYEAAYNALIENDLLKTGNLKTDKNIH*