Scaffold Ga0078894_10296576

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10296576
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1466
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F027516	Metagenome	194	Y
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_102965762	F003750	N/A	MNEEILHRAMQVVIYSGGIYAFWQITKHMPKALYTLLECITVMSFTVLCITPISALIEFILSGNIDTTMMFIAGLTIVSALSAMWMVMVESSRALQGKKRYQYVIL*
Ga0078894_102965764	F057375	GGGGG	MAETVYFVNASDVFEAIELGDFEQGQFLDQFTFGDSLTDLTLIKKQTFVNRLVKFIGECEDVYEKDVMMQNLKEYNFGLLDCIKHVNIEE*
Ga0078894_102965765	F027516	N/A	QDYIIKCEVAKTAFQCRVSASLSAPIATPEERLAWIAEDLKKLEKELEAFGKAFDEQDEVGDPFVDLGVK*