Scaffold Ga0078894_10260562

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10260562
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1572
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F056536	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_102605622	F021097	AGG	MQRNYQRNYFSDACVAIVCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYFCINAKYMN*
Ga0078894_102605623	F015587	N/A	MTALNIRKNLASILVNTAAAVENVKVPTKAGMTEKLNEYRTRAAALIMPNDMAFIVQPKQGN*
Ga0078894_102605624	F056536	N/A	MLCYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQHISQLHLDTMAGTIF*