Scaffold Ga0078894_10197558

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10197558
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1820
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043397	Metagenome	156	N
F053301	Metagenome / Metatranscriptome	141	N
F100477	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101975581	F043397	N/A	MPRYAVYIPFNYSYGGESVDEEFDTIVKAENEKDAIQEAITELEGEYVIKTLNSDEITVEEVPEFPSFDEWEETYTALKNPHAYEGEQGLGEIMFDTDGDEYQTVRGFDSSKVWTVRSTEYGLILTAGLGVVDRFGYILSEEPVTEEDKDKAYVID*
Ga0078894_101975583	F100477	AGGA	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0078894_101975584	F053301	GGAGG	MTVREVIDLLESIAQKEGDQTECIVEIEEENYNTEAEIHTVCTNGYPDGAKKICLLGTKDEEA