Scaffold Ga0078894_10138009

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10138009
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2181
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001460	Metagenome / Metatranscriptome	690	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101380092	F000868	AGGTGG	MSSFLENENQMLVDAIYSEIGEQLVEDWVNSNLDEGQLYADWCVADMSNSNYLKGRFNQFYNLGPTDTYYLQVDVEA*
Ga0078894_101380093	F001460	GGAGG	MLGYEMADIDEMINAVHDAKLFYLRTPSDLIDKEPLIKSLEKTNDFLQGLWAEGYFDGYQD*
Ga0078894_101380097	F000441	AGGAGG	MKMSDVYLNDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQADLS*
Ga0078894_101380098	F000852	GGA	MATKREYLKAQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPTGKAK*
Ga0078894_101380099	F031497	AGGCGG	MNKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRIMEMVVSIVSEQAKMYEVYSNQGTHTEGLMLANELNECIKAYQQDNNLVNLKLPSRSYKVKREEPAERTYQFGWREEK