Scaffold Ga0078894_10125293

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10125293
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2290
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F002869	Metagenome / Metatranscriptome	524	Y
F007163	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101252935	F002268	AGGA	MSGTPTDKGPGITGFIEIFEGRLNKMKLHLKEELGKAKHDRNRKWIKIQLADARKLNKTLKEMRNASAKKCPHCGEKL*
Ga0078894_101252936	F002869	GGAG	MTNEITTEMLDRTMAWCKQNAFWGTPSAVPKVLDFYFEKTRNSITEDWPETFTLQELADTLGIEQVRYRTYYSQDNLTLRLFVFRPRCTYSEEQKMLALGFVIAQDSDSDTIPNQPVEEVEE*
Ga0078894_101252937	F007163	GAGG	MTLEDLQYIFEYQIEEGTDKLYFMLTDGDGHPVIQRHPADDLAGLLPMLDSFQYTGHNVMPRFKK*