Scaffold Ga0078894_10114154

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10114154
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2398
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F009685	Metagenome / Metatranscriptome	314	Y
F013414	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101141544	F013414	AGGCGG	MKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTEEGIYNSGLTSEGLFLANELNQTLNKLIKKYKWENIKLPVDPDKVIAKMPKVQEQSYRHSWLHEEHREPTLMSHPFI*
Ga0078894_101141545	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVAIQEALNKGLTFTDPQPVTKKAK*
Ga0078894_101141546	F009685	AGGAGG	MKMSDQHIDAVLTKAQKLLWGGSETENIEAHNLISKLIRDRMSEKNLD*