Scaffold Ga0078894_10111968

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10111968
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2420
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F005701	Metagenome / Metatranscriptome	392	Y
F057139	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101119683	F057139	N/A	MNVVKLNRNYNGYHYFSHRVEFYGSQDYRTRQWIRVRNWLWSQFGPSAEQNLARADYFDGEQPKWAWDSEKSSIYLKDEAYTMFTLKKEFWDNAENL*
Ga0078894_101119684	F002052	AGGAG	MPRTYEFKFTIECASDGTPDLDRIEQMIDLNMQDLVFDDEFIAALDEKESVSIQVVPQFGKTIG*
Ga0078894_101119686	F005701	AGGA	MFTNCIAYAKLVYNKKLNAYKVQIAFNVHKKLVGTNYKYSFPVQAKCNYVSGDLLAEDLQNEVQRTVAYAQQNLRTTQIVFVE*