Scaffold Ga0078894_10108459

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10108459
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F007644	Metagenome / Metatranscriptome	347	Y
F009685	Metagenome / Metatranscriptome	314	Y
F025671	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_101084591	F025671	N/A	YCENDCGEFCSECNEGSWQDEEAMAECQTHMVILESREKVEA*
Ga0078894_1010845910	F000852	GGA	MATKREYLKSKGITVGARGRFSGAAKVALQEAEKQGIQFSKETSPKK*
Ga0078894_101084592	F000868	AGGTGG	MSFLENENQMVIDATYQEIGEMLVEDWVNSNLDEGQMFADFRFAEMADNNYLKGRFNLFYDLKPGDQYYLEYDEEA*
Ga0078894_101084594	F007644	GGAGG	MVTKTSRFLEYMKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVALDIMNETNERYE*
Ga0078894_101084595	F000263	AGG	MKTDIIELPPHLQRLVNYDINGLDIMHGELKNLMLIWEKELEKAQEIEEESGEAMDSMERKYCEGFLDSLVALYNLTYQLSFQIGIREENRKDGHI*
Ga0078894_101084598	F009685	AGGAGG	MKMSDQYVDEILNKAQKLLWGGSETENIEAHNLIAKLIKDRMTDAEV*