Scaffold Ga0078894_10099247

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10099247
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2567
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F053245	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100992472	F020140	N/A	MTHKFAIVVDRDFYDKVQNNNDFYLRVLVLDVIRALSDESEAIEKYSSEIFYKCAKSISSEVRMFEDEMSYIFYLELSSGYLENFFEEPLDDLE*
Ga0078894_100992474	F025688	AGAAG	MKFTLNIDGTNNGGKFLENYIGQTVDIESLYKDIDINSPPLATLKTEDNKQHSIQLIDVRFIGENVFIQCFVIQHDDKHGGKALLRLKPVVDLAKIINP*
Ga0078894_100992475	F053245	N/A	MKHVTIKIGDKDLEDLSEIFKNEANFKPQAKQDLLIIEILRQVLNNPKMNITEEVDL*