Scaffold Ga0078894_10096196

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10096196
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2606
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009005	Metagenome / Metatranscriptome	324	Y
F023789	Metagenome / Metatranscriptome	208	Y
F027513	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100961961	F009005	N/A	MLTESEIIQQARTMGMDEEILSYAKQIQRQLSTEGDEALWLDCLEMAYNELILNEL*
Ga0078894_100961962	F027513	AGG	MRKNQNVKPGEQVASNRALHNDMQLVENANGEYDAVVFHIDRYTLIRGEYYPIGRNFHYPKIWGRKYAATKLIEDIMADKRKSIQEAELELTKLQKCLDKVNQWSDTDL*
Ga0078894_100961963	F000785	N/A	MRVTNKKGMKFDCTRLMKWAEEKLGKSKCTAIAFTWDPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQTFRWYNHYNIKYGYKNNPYELEARENEKLVKRAYKRKGKSNA
Ga0078894_100961964	F023789	N/A	MDTTNSRGLTQMERTELQSKIQRLQWLLRECIGLEEYELCAQIKAVIQRKHTILNENPKELT*