Scaffold Ga0078894_10095001

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10095001
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100950013	F093847	AGAAG	MVFISQSQRDSTLTINLRKTFARVTYFIEQSSKGKSRETILKELDLSEDEFQFLLNKMLEISMLNDNDAVISSIDILDNVFIGGVYVTSNNKTLLSF*
Ga0078894_100950014	F039139	GGTGG	MFLNSFEFTSEDIVTILRAHETYVTIEQLAELTDVLDYDSIVRSALQYTDSDMQLKSALSQAEDLMIMDGLYITEPKRFHVDN*
Ga0078894_100950015	F060908	N/A	MTRKLDYTISETISARSKNRILVPKKYIKYIGMNPGFVAHVTNLNGAFIVSACPTPESKKFMVDKDGAVRFYGNDSKYKIMIADNVVVLNEYVP*