NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10066215

Scaffold Ga0078894_10066215


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10066215 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3107
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F005697Metagenome / Metatranscriptome392Y
F009503Metagenome / Metatranscriptome317Y
F021065Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100662151F005697GGAMGFLDNYEASRERLERWLKTYPTGRIETSIVEFSADKGYVLVEAKAFRHEDDSRPAGIDYAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANTDKQYDYWTTKFGDVPSYKTEEEVAAAGVPTLASGIAEISKQLGGELVKESPQCKHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCEPLWYVFTSDGTWKPQV*
Ga0078894_100662152F000403GAGMEIINPQTMVGKLLKNGEVVEEYKMEQCDKCSSLVRFDAFGYQKGYGNEKIIWFCVGCR*
Ga0078894_100662153F021065N/AMTLTREEEFTCHDAAIHLAKANTDYWQTRPGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVDFDPFEQKGKTKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRRSNYGHSSV*
Ga0078894_100662154F009503AGGAGMDTVQFECRKCKKVTKQVIHKVTDNLPDGVEVIQCTKCEVMGVAQIGTSNASL*

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