Basic Information | |
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Taxon OID | 3300005662 Open in IMG/M |
Scaffold ID | Ga0078894_10066215 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3107 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F005697 | Metagenome / Metatranscriptome | 392 | Y |
F009503 | Metagenome / Metatranscriptome | 317 | Y |
F021065 | Metagenome / Metatranscriptome | 220 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078894_100662151 | F005697 | GGA | MGFLDNYEASRERLERWLKTYPTGRIETSIVEFSADKGYVLVEAKAFRHEDDSRPAGIDYAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANTDKQYDYWTTKFGDVPSYKTEEEVAAAGVPTLASGIAEISKQLGGELVKESPQCKHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCEPLWYVFTSDGTWKPQV* |
Ga0078894_100662152 | F000403 | GAG | MEIINPQTMVGKLLKNGEVVEEYKMEQCDKCSSLVRFDAFGYQKGYGNEKIIWFCVGCR* |
Ga0078894_100662153 | F021065 | N/A | MTLTREEEFTCHDAAIHLAKANTDYWQTRPGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVDFDPFEQKGKTKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRRSNYGHSSV* |
Ga0078894_100662154 | F009503 | AGGAG | MDTVQFECRKCKKVTKQVIHKVTDNLPDGVEVIQCTKCEVMGVAQIGTSNASL* |
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