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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005662 Open in IMG/M |
| Scaffold ID | Ga0078894_10066215 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3107 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| F009503 | Metagenome / Metatranscriptome | 317 | Y |
| F021065 | Metagenome / Metatranscriptome | 220 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078894_100662151 | F005697 | GGA | MGFLDNYEASRERLERWLKTYPTGRIETSIVEFSADKGYVLVEAKAFRHEDDSRPAGIDYAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVEKTSAKVANTDKQYDYWTTKFGDVPSYKTEEEVAAAGVPTLASGIAEISKQLGGELVKESPQCKHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCEPLWYVFTSDGTWKPQV* |
| Ga0078894_100662152 | F000403 | GAG | MEIINPQTMVGKLLKNGEVVEEYKMEQCDKCSSLVRFDAFGYQKGYGNEKIIWFCVGCR* |
| Ga0078894_100662153 | F021065 | N/A | MTLTREEEFTCHDAAIHLAKANTDYWQTRPGGYSTEKSLHDLIAQDAQSIGSEWVVAKYLNVDFDPFEQKGKTKADVGSHFEVRWTKYLAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHSKQPNWWVTQINLQPIENLRRSNYGHSSV* |
| Ga0078894_100662154 | F009503 | AGGAG | MDTVQFECRKCKKVTKQVIHKVTDNLPDGVEVIQCTKCEVMGVAQIGTSNASL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |