Scaffold Ga0078894_10065238

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10065238
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3128
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F051126	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100652381	F006385	N/A	AIVIALAGSLGMMLAFWQRNVQLEKEIRRLQIALRTERLKK*
Ga0078894_100652382	F051126	AGCAGG	MSAKPYTIQDLLVGKHYRSHTRHDEGVIQYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVGN*
Ga0078894_100652383	F007263	AGG	MIKEYIDENEFYFIKDEMRFCCDESQFKYVCKAHGEAMGCYFCEFDYSNDCEEQH*
Ga0078894_100652388	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKKYTRKGRKCQSEMLYLKDNNN*
Ga0078894_100652389	F011487	AGG	MTFENDEYLDEYYATTCPSCHENAVDSYEEKCTHCLLEEMSATYNEDIALEMSLGLDY*