Basic Information | |
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Taxon OID | 3300005662 Open in IMG/M |
Scaffold ID | Ga0078894_10065238 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3128 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002515 | Metagenome / Metatranscriptome | 552 | Y |
F006385 | Metagenome / Metatranscriptome | 374 | Y |
F007263 | Metagenome / Metatranscriptome | 354 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F051126 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078894_100652381 | F006385 | N/A | AIVIALAGSLGMMLAFWQRNVQLEKEIRRLQIALRTERLKK* |
Ga0078894_100652382 | F051126 | AGCAGG | MSAKPYTIQDLLVGKHYRSHTRHDEGVIQYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVGN* |
Ga0078894_100652383 | F007263 | AGG | MIKEYIDENEFYFIKDEMRFCCDESQFKYVCKAHGEAMGCYFCEFDYSNDCEEQH* |
Ga0078894_100652388 | F002515 | N/A | MKKTPEELRRLMELRRSNAASAVPSKKKYTRKGRKCQSEMLYLKDNNN* |
Ga0078894_100652389 | F011487 | AGG | MTFENDEYLDEYYATTCPSCHENAVDSYEEKCTHCLLEEMSATYNEDIALEMSLGLDY* |
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