Scaffold Ga0078894_10040870

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10040870
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3881
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F030094	Metagenome / Metatranscriptome	186	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1004087010	F081267	AGGAG	MSYQHHWVVVYDEDWGAFMVDAETTNVMLEEGDGTIYNKTTGHWEFAEEGSEELAEYQRLEEILAYNLTRLDLTAGIG*
Ga0078894_1004087011	F007525	AGGA	MKTYEGVTVTYTEVIPTSKQMAEFYVWQEGYESYATIRYEDRVVEVERGGEMHLTLPYFINGELCDEGATHVRYSDDLQAAGINDDIQLMQFLKTVSNSGFEIYRMNPWWEVFSHNCDMGEVYDTFYEAVDGGIDYILDDRNW*
Ga0078894_100408706	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQYDWDTYLEQNPDFDENDRDDIQEMWDYFKSLGCYDEIDDTVDTDVIMTGIETYGVEVEIN*