Scaffold Ga0078894

Basic Information
Taxon OID	3300005662 Open in IMG/M
Scaffold ID	Ga0078894_10034203 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005662 Open in IMG/M

Scaffold ID

Ga0078894_10034203 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4211
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4211

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009252	Metagenome	320	Y
F017447	Metagenome / Metatranscriptome	240	Y
F021250	Metagenome	219	N
F033698	Metagenome / Metatranscriptome	176	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100342031	F021250	N/A	MIVEEKLDGWNNNLIKTDEVIYPQSKDNKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKVYLNDKVVPQRIILISSTAHSDSNKIFKTLKNLDWENDVLEDYDDDLLKIKMDELKNDLDHSKDYKLYKQAWKNFNECKSIDELDDDEIKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSAFTNLCIRNRHLIPGNIIIAIQSIMNVPKTIRLNANLLALFKFSDYETIL
Ga0078894_100342033	F033698	N/A	MKFFRYKQVGRLNFFGVDDELNAEPSSYYNTKFRLYNNTELNTKLLRFRINNLRDLKLSQNAKIILESCYIPTIIETGLDIKHNSNIILKFKNVSDSKCYDSSNDNNGSTVIFSHSVQSRPQSIVSVTDTTLAGAVTTYNNNIENVNKFDNGISFFNPAPDKLYNFTIANTFTNSTVFEFELIYDMQIGVDIDVNFDRGELYKFHCSFIICDYDEEELISNDSNEVDYKKFGPHFPLKKSL*
Ga0078894_100342034	F009252	N/A	MDKINIYINSKNRDLNEKISNFTVRIPQNLLRLQQNEYFTLNVNGFYCYNSWFNCIDGFNNEFQIIIKNINDQIVETYNYSLNDGNPNVNDVRSNLNTLLLNMVTVTYDKQRNKFIFKRTLPVSTNNYSMYLKVINSEDFLGFYKSDRNIEFHLPYLQGVYSSSIINILGDECIIIKINGDCILAGNTVDNFGTETYEPSNIIFMMPINVPSNGLLEYNNEDGGDSFQYRLANNEQITWFTLTVHNQDDELIPNFSDYILLLQFIKHKTEEGKVESLLNTLIDYVKQIYLLISHVLFPSMS*
Ga0078894_100342035	F017447	AGG	MNFGSRAISMFNRTAPKISKVIGQVANAGRNIGQIVKSGRNIGSIANQLSGNKLSQLPIAQKIQDVANKIESGANYVSGNEDKAQQALSTLSRKVNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078894_10034203

Overview

Ecosystem & Geography

Associated Families

Sequences