Scaffold Ga0078894_10033999

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10033999
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4223
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F012573	Metagenome / Metatranscriptome	279	Y
F054035	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1003399912	F054035	N/A	MRVPGSKRKEYTTERVRKMRMERELTKAKTNGVSDSQVQYYLGKLQAAGHMKVNGFRSMNLEQEGIVDSFTNESGGVKKTIKLEYQMYNKNGMDDRPHFDGYLRSASEVDKRYKLKGWFNEDGTIRIELVN*
Ga0078894_1003399914	F012573	N/A	MSNQTKDWMERLAKNYKLPEEQPKQKKEPVSLLKESQLKIIMGRDKKDLVSKK*
Ga0078894_100339997	F010321	N/A	MELDPIQQSELERLNKALANQSLQPDDKKKLTKKKLNPKTGELELYVDNGNGGVRLASVNIFE*