Scaffold Ga0078894_10033851

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10033851
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4232
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037689	Metagenome	167	Y
F048932	Metagenome	147	Y
F066436	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100338513	F066436	GAGG	MEHDTNLRDLASMFALAGLIIRNREDENLAEAAHDIADQWMKARNKEPEEGLAAIKKEKRNVRKHEDIR*
Ga0078894_100338517	F037689	AGGA	MTKAKQKSHAEWIKICNNLNAALQSALKHEDELNDDIEHLEIQMMKMEEQLTMSVGVIKYLETKIVRPDPV*
Ga0078894_100338518	F048932	N/A	EYPNRGTLWTNDYKKTDMQPDMKGDIKLEIELVKELLASAESDHVVIKLGAWLGKHTDGKRKITLKFDSYKKEAPAASSAKDPWDD*