Scaffold Ga0078894_10032597

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10032597
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4308
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015472	Metagenome	254	Y
F025741	Metagenome	200	N
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N
F076087	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1003259713	F074878	N/A	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGVEWLLQDGDKFYSQKGLVK*
Ga0078894_1003259714	F015472	AGG	MAHFYLNQGGTRWYSDGMVQVTGVYKDKVYDRMRQPMFWESFGNFALCYVRVGRTVFCGFTEDNNGVIQLNLGKCKVVR*
Ga0078894_1003259715	F056602	AGGTGG	MSNWTKGFIGVAIASQVFLFVILFGCKLGDAFFISGVDLFGMVMSSVCSLVYIPAILVSYDSDKIRKKINEQLQA*
Ga0078894_100325976	F076087	N/A	MYWRIVMYSDAEMEDVLFPHMMTEEQLDEQFDIEPDCEDPWSEAWMDANALESAGWGEDDGCTDIDW*
Ga0078894_100325979	F025741	N/A	MPYNINMRNTTDPIIQFVHDHVEGDPLFKGYVVVELAILLRQNPTMSMSELLQDATEVALEEWDRDQNQD*