Scaffold Ga0078894_10020844

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10020844
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5297
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Straboviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N
F060908	Metagenome / Metatranscriptome	132	Y
F078705	Metagenome	116	N
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1002084416	F054860	N/A	MTEETLAFDALLCNDKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHALVTAFREWCSNQPPIYDKESGETFNFSADIFVNDCLTEHVGLKHELAVSL*
Ga0078894_1002084418	F053301	N/A	IAQKEGDQTECIVEIEEEDYNTEAEIHTVCTNGYEDGTKKIALVGTKDDETIEE*
Ga0078894_100208444	F078705	N/A	MYIAVDALANSDDSKLSYMVFPYDEELLDAIVENLNEIRIDDEVVFPIEDTLLVRGEFHYVRKKVTMTEIANHRFCIAKNLEHIPKLDEPKLHLTNDYFYFSGYKVQGKKNEQKNVRFVSENFNIVFIENLRKYIKKKELVPD*
Ga0078894_100208445	F093847	AGAAG	MVFLLQSQKNSTLTINLRKTFARVVYFIEQINKGKSKDTILKELELSEEEFQFLLDTMLKFSTLKDNEATISSIQIKEEIFIGGTYVTINNKDVISL*
Ga0078894_100208446	F039139	N/A	MSMFLNAFEFTSEDIVTILRAHDTEITIHQLAEIHSILDHDSIVRSALQYNDPDMQLKSALSQAEDLMIMDGLFITEPKKFHVDN*
Ga0078894_100208447	F060908	N/A	MTRKLDYTTSETIFIRSKNRIHIPKKYVSYIGLHKGFVAHVTKISDAYVVTACPTPQSKKYMVDKDGAVRFNVEKKYYDIMIADNVVVIK*