Basic Information | |
---|---|
Taxon OID | 3300005662 Open in IMG/M |
Scaffold ID | Ga0078894_10018272 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5626 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (56.25%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007752 | Metagenome | 345 | Y |
F015209 | Metagenome | 256 | N |
F015472 | Metagenome | 254 | Y |
F025741 | Metagenome | 200 | N |
F074878 | Metagenome / Metatranscriptome | 119 | N |
F076087 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0078894_1001827212 | F025741 | N/A | MENTTITIKQFVNDNVEGDPLFKGYVVVELGILMFQNPTLSMSELLQDATEVALEEWDRDQNQD* |
Ga0078894_1001827213 | F074878 | N/A | MSYTIAMNTTDIVIVKFRFRTPRMVYSVYFNGMLLASGYDAQQLGEDYARKYGTEWVLQDGNKFYTQGGVK* |
Ga0078894_1001827214 | F015472 | AGGAGG | MAHYYLNQGGTRWVCDNKIQVTGEYNGKAYDRMRQPMFWEAFGNFALCYVRVGRTVFCGFTEDNNGVIQLNLGKCKVVR* |
Ga0078894_1001827216 | F015209 | N/A | MNSYRHKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPFCECFENQCTFVPKGEIDNMELVIIAKPIDDVLRNIQVIP* |
Ga0078894_100182728 | F076087 | GGAGG | MYSDAEMEDVLFPHMLTDEQLDEQYDVEPDCEDPWSEAWMDANALESAGWGENDGCSGDDW* |
Ga0078894_100182729 | F007752 | GGA | MQLWEVKGFQSSSVKTLFVGKTANGQDCIGCAWDAYTTYIYAYEGIVDTFMYYMERYNSVGKAMAFTKLKHGMEDQTYYTAYWSTMPSKVHNQLYRFSRYDMIRHMSNIVVHQNVCFDTPENAIKNLISSGDLEAERSHFVDCMTRRVTA* |
⦗Top⦘ |