Scaffold Ga0078894_10016127

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10016127
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5966
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F043787	Metagenome / Metatranscriptome	155	Y
F054559	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1001612715	F014503	GAG	MVYAQMGLTAVKGGWIRMRKTVVHHWRFEDGKTCPNPGTAFPLDPPPRGWYCWVYPEDDREFEQWMKKNCPTADCTHRFNSGDPMYTVYIKEDKEATIFQLKWM*
Ga0078894_1001612718	F043787	N/A	MAIGLGSKMRTASVQEIMATRARATFAYRINFQEVGYLTLPKMKEWCEEKCEGLWRCQSTHALYFQFAEERDATMFMLRWGSAEGNKLK*
Ga0078894_100161277	F054559	N/A	MKIGFSFGRCIRDIVNGDVNYDDVAFIISGTALRDEDAIKWCIDEYMYRSDYLYGLDKDQCVEVGLKLFNEGKMFQPRLQNIRAFHIPADAVWADMFPTAMADNESAKRAWDTYRFMIHMTTQLPEGVEENWKG*