Scaffold Ga0078894_10014894

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10014894
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6187
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003661	Metagenome / Metatranscriptome	474	Y
F062577	Metagenome / Metatranscriptome	130	Y
F082606	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100148941	F062577	N/A	LINQAVPALLATAVIGLGGLFIQVAKLDQSVNTVAADIQELKVDSKERLSDIETRVRMLEMTIGKNK*
Ga0078894_1001489412	F082606	N/A	MVAPVIPTGQKVYKMSPNPRGVRVERDLWRFHPGMPCYVRGWPQVEATVISKVEGCSWPTYLVQSFATGATYQVSQLYLSKRPIETR*
Ga0078894_100148942	F003661	AGGA	MDPTTAAVVAIVIAAGSEIISLLPIKENGWIQLLVKALKVIFPKR*